Interestingly Hereford to Cardiff is shown for ECS working rather than diversionary capability and also no clearance planned for Oxford / Banbury to Paddington or Marylebone. Nor Waterloo via Basingstoke to Salisbury or Basingstoke to Reading it seems.
I am sure Wocester to Cheltenham will see regular use not just diversions.
As for East Coast area I'm surprised Harrogate to York is being cleared - can't see IEPs going there very often. Huddersfield clearly has been missed especially now the North TPE route from Liverpool to York via Manchester and York will use them.
Presumably lots of route around the Glasgow suburbs are being cleared (the map isn't clear) as the East Coast operator seemed to have a 'route card' as long as your arm.
The document I linked to is, as I said, seven years old, so it has been overtaken by events in various places.
At that point FGW diversions of HSTs to Marylebone via Banbury were a recent novelty (first done in December 2010) and the Bicester chord was still at the design stage, so the DfT probably hadn't bothered to think about the Chiltern Line.
The likelihood of diversions that way in future is limited once all the work for Crossrail is out of the way, making blocks of all four tracks at places between London and Reading a rarity, so Marylebone diversions may soon be a distant memory. Same can be said for large-scale diversions into Waterloo via the South Western Main Line. So whether it would even be worth the time and money to achieve clearance is open to doubt.
Hereford to Newport will indeed only be used for empty stock moves, which is no different from the regular use of this route by HSTs for the past 30 years.
There are only a few GWR Worcester-London services via Cheltenham now and there are not likely to be any more than that in the immediate future, especially when the Cotswold Line service is going to be enhanced once the new timetables finally kicks in, so Worcester to Cheltenham will remain largely used for empty stock and diversions if the Cotswold Line is shut.