Or was the 87/90+DVT removed at Carlisle/Preston and the Mk3 rakes just ran as an ordinary Class 47-hauled train?
The AC loco would be removed, asides from the unnecessary extra weight, I'm not sure they were/are cleared over the route. When 47s worked Class 86/90 GEML sets from Norwich to Great Yarmouth, there were a number of speed restrictions imposed when the AC loco was left on the sets due to clearances for example.
When the WCML sets became push-pull with DVTs, the DVT replaced the brake vehicles in the sets, so would always be left on unless defective as they provided the required 'brake' vehicle - i.e. with a handbrake.
However the 47 would always be on the front because most/all of them aren't TDM push-pull compatible.
Even those that were, i.e. the Scottish-based 47/7s, would still not be compatible with the DVTs as they had a different more basic TDM system. The DBSOs had to be rewired when they transferred to Anglia as the new TDM system wasn't compatible with the BR/Brush two-wire system. (The 47/7 system was a basic, two-wire system with only four power demand channels and a very limited number of fault indications available. It had been designed to also work with AC electrics, the manual had an equivalent function for Class 85s for each operation, but this was never taken forwards and the newer more flexible TDM system was adopted instead with essentially limitless control of traction demand and far greater functionality.)